There’s something absolutely comforting about a warm blueberry muffin fresh from the oven. Whole Wheat Blueberry Muffins are not just delicious—they pack a nutritious punch too! Made with wholesome ingredients, these muffins are perfect for breakfast, snack time, or even dessert. The vibrant blueberries burst with flavor, providing a sweet contrast to the nutty whole wheat flour. Let’s dive into this delightful recipe that will have your kitchen smelling divine!
Why This Recipe is a Keeper

These Whole Wheat Blueberry Muffins are a keeper for several reasons. First, they are made with whole wheat flour, which means you’re getting more fiber and nutrients compared to regular all-purpose flour. Second, the use of applesauce and pure maple syrup keeps them moist and adds natural sweetness without overwhelming sugar. They’re super easy to whip up, making them a fantastic option for busy mornings or lazy weekends. Plus, who can resist the pop of fresh blueberries in every bite?
What Goes In
To create these delightful muffins, you’ll need the following ingredients:
- 2 cups whole wheat flour – The base of our muffins, packed with fiber.
- 1 teaspoon table salt – Enhances the flavor of the muffins.
- 2 teaspoons baking powder – Helps the muffins rise and become fluffy.
- 1/2 teaspoon baking soda – Works with the baking powder for extra lift.
- 1 cup blueberries – Fresh, vibrant, and bursting with flavor.
- 2 large eggs – Provides structure and moisture. (See note for egg-free recipe)
- 1 teaspoon pure vanilla extract – Adds a lovely depth of flavor.
- 1/3 cup melted and cooled coconut oil – A healthy fat that adds moisture. Can substitute with canola oil.
- 1/3 cup pure maple syrup – Natural sweetener that complements the blueberries perfectly. Honey can be used as a substitute.
- 1 cup unsweetened applesauce – Keeps the muffins moist while reducing added sugar.
Tools & Equipment Needed
Before we get cooking, gather the following tools:
- Mixing bowls – For combining dry and wet ingredients.
- Whisk – To mix the ingredients smoothly.
- Rubber spatula – Perfect for folding in the blueberries without smashing them.
- Muffin tin – To shape our muffins. Use paper liners for easy cleanup.
- Measuring cups and spoons – Accuracy is key for baking!
- Oven mitts – Safety first when handling hot muffins!
The Method for Whole Wheat Blueberry Muffins

Ready to make some magic in the kitchen? Follow these simple steps:
Step 1: Preheat the Oven
Preheat your oven to 375°F (190°C). This ensures that your muffins will rise perfectly.
Step 2: Prepare the Muffin Tin
Line your muffin tin with paper liners or lightly grease each cup with coconut oil to prevent sticking.
Step 3: Combine Dry Ingredients
In a large mixing bowl, whisk together the whole wheat flour, salt, baking powder, and baking soda until well combined.
Step 4: Mix the Wet Ingredients
In a separate bowl, combine the eggs (or egg substitute), vanilla extract, melted coconut oil, maple syrup, and applesauce. Whisk until smooth.
Step 5: Combine Wet and Dry Mixtures
Pour the wet mixture into the dry ingredients and stir gently until just combined. Be careful not to over-mix!
Step 6: Fold in Blueberries
Gently fold in the washed and dried blueberries, ensuring they are evenly distributed throughout the batter.
Step 7: Fill Muffin Cups
Spoon the batter into the prepared muffin cups, filling each about 2/3 full. This allows room for them to rise.
Step 8: Bake
Place the muffin tin in the preheated oven and bake for 18-20 minutes or until a toothpick inserted into the center comes out clean.
Step 9: Cool and Enjoy
Once baked, remove the muffins from the oven and let them cool in the tin for 5 minutes before transferring them to a wire rack. Enjoy warm or at room temperature!
Swap Guide

If you’re looking to customize your muffins or adapt them to different dietary needs, consider these swaps:
- Egg-Free Option: Replace the eggs with 1/2 cup of unsweetened applesauce or 1/4 cup of ground flaxseed mixed with 3/4 cup of water.
- Maple Syrup Substitution: Use honey or agave syrup in equal amounts if you prefer.
- Oil Alternatives: Substitute coconut oil with canola oil or melted butter for a different flavor.
- Fruit Variations: Swap blueberries for raspberries, chopped strawberries, or even chopped nuts for added texture.
Things That Go Wrong
Baking can sometimes be tricky, but here are some common pitfalls and how to avoid them:
- Dense Muffins: Over-mixing the batter can lead to tough muffins. Mix just until combined.
- Flat Muffins: Ensure that your baking powder is fresh. Expired leavening agents can result in muffins that don’t rise.
- Sticking Muffins: If you forget to grease the muffin tin or use liners, your muffins may stick. Always use liners or oil the tin.
- Overbaking: Keep an eye on the muffins as they bake; ovens can vary in temperature. Check for doneness a few minutes early.
Refrigerate, Freeze, Reheat
Storing your Whole Wheat Blueberry Muffins correctly will keep them fresh and delicious!
You can store cooled muffins in an airtight container at room temperature for up to 3 days. For longer storage, freeze the muffins by placing them in a single layer on a baking sheet until frozen, then transfer them to a zip-top freezer bag. They will keep well in the freezer for up to 3 months.
When you’re ready to enjoy, simply reheat them in the microwave for 15-20 seconds or pop them in the oven at 350°F (175°C) for 5-10 minutes until warmed through.
Reader Questions
Can I use frozen blueberries instead of fresh?
Absolutely! Frozen blueberries work well in this recipe. Just make sure to add them directly from the freezer; don’t thaw them, as they can turn mushy.
How can I make these muffins gluten-free?
To make gluten-free muffins, substitute the whole wheat flour with a 1:1 gluten-free baking flour blend. Ensure that the blend contains xanthan gum for the best texture.
What can I use instead of applesauce?
You can replace applesauce with mashed bananas or yogurt. Both options will maintain the moisture of the muffins.
Can I add nuts to the recipe?
Yes! Chopped walnuts or pecans would make a wonderful addition. Just fold them in with the blueberries for a delightful crunch.
One Pan, More Ideas
If you love the idea of whole grain muffins, here are some other fantastic recipes to try:
- Whole Wheat Carrot Muffins – Packed with vitamins and flavor!
- Banana Oatmeal Muffins – A hearty, wholesome option.
- Whole Grain Apple Muffins – Sweet and spiced, perfect for fall.
- Zucchini Muffins – Moist and delicious, a sneaky way to get in veggies!
Ready, Set, Cook
Now that you have all the details, it’s time to make your own batch of Whole Wheat Blueberry Muffins! Enjoy the process of baking and the delicious aroma that fills your kitchen. Remember, these muffins are not just a treat; they’re a wholesome snack you can feel good about serving to your family and friends. Happy baking!

Whole Wheat Blueberry Muffins
Ingredients
- 2 cups whole wheat flour packed with fiber
- 1 teaspoon table salt enhances flavor
- 2 teaspoons baking powder helps muffins rise
- 1/2 teaspoon baking soda works with baking powder
- 1 cup blueberries fresh and vibrant
- 2 large eggs provides structure and moisture
- 1 teaspoon pure vanilla extract adds depth of flavor
- 1/3 cup melted and cooled coconut oil can substitute with canola oil
- 1/3 cup pure maple syrup natural sweetener
- 1 cup unsweetened applesauce keeps muffins moist
Instructions
- Preheat your oven to 375°F (190°C).
- Line your muffin tin with paper liners or grease each cup with coconut oil.
- In a large mixing bowl, whisk together the whole wheat flour, salt, baking powder, and baking soda until well combined.
- In a separate bowl, combine the eggs, vanilla extract, melted coconut oil, maple syrup, and applesauce. Whisk until smooth.
- Pour the wet mixture into the dry ingredients and stir gently until just combined.
- Gently fold in the blueberries, ensuring they are evenly distributed.
- Spoon the batter into the muffin cups, filling each about 2/3 full.
- Bake for 18-20 minutes or until a toothpick inserted comes out clean.
- Let the muffins cool in the tin for 5 minutes before transferring to a wire rack.
Equipment
- Mixing Bowls
- Whisk
- Rubber Spatula
- Muffin Tin
- Measuring cups and spoons
- Oven mitts
Notes
- Store muffins in an airtight container at room temperature for up to 3 days.
- For longer storage, freeze muffins in a zip-top bag for up to 3 months.
- Reheat in the microwave for 15-20 seconds or in the oven at 350°F for 5-10 minutes.
